Variant report

Variant	rs56406931
Chromosome Location	chr8:131106587-131106588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131026799..131030209-chr8:131104544..131108805,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153310	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11779059	1.00[ASN][1000 genomes]
rs11785995	1.00[ASN][1000 genomes]
rs56133915	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1017292	chr8:130887132-131107258	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv465808	chr8:130963259-131118658	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv612232	chr8:130963259-131118658	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131062600-131110600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:131075000-131106800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:131076200-131170600	Weak transcription	Small Intestine	intestine
4	chr8:131080400-131107000	Strong transcription	Placenta	Placenta
5	chr8:131084000-131107400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:131087800-131109600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:131089400-131107200	Strong transcription	NHEK	skin
8	chr8:131091000-131120000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:131091800-131106800	Strong transcription	A549	lung
10	chr8:131092800-131107200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:131095600-131108000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:131096000-131106800	Strong transcription	Osteobl	bone
13	chr8:131096600-131120000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:131098600-131109400	Weak transcription	Psoas Muscle	Psoas
15	chr8:131099800-131117400	Weak transcription	Fetal Heart	heart
16	chr8:131101800-131121400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:131102000-131110600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:131102000-131123000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr8:131102200-131109400	Weak transcription	Aorta	Aorta
20	chr8:131103000-131122400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:131103400-131119000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:131103600-131108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:131103600-131118200	Weak transcription	GM12878-XiMat	blood
24	chr8:131103600-131121400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr8:131103600-131122400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:131103800-131106600	Weak transcription	K562	blood
27	chr8:131103800-131106800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:131103800-131106800	Weak transcription	HMEC	breast
29	chr8:131103800-131109600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:131103800-131120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:131103800-131122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:131103800-131122800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:131104000-131106800	Weak transcription	Hela-S3	cervix
34	chr8:131104200-131108600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:131104200-131117600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:131104200-131121400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:131104400-131106800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr8:131104400-131107000	Strong transcription	Fetal Muscle Leg	muscle
39	chr8:131104400-131107200	Weak transcription	HepG2	liver
40	chr8:131104400-131108000	Weak transcription	HSMMtube	muscle
41	chr8:131104400-131108600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:131104400-131108600	Weak transcription	Spleen	Spleen
43	chr8:131104400-131109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:131104400-131109400	Weak transcription	Esophagus	oesophagus
45	chr8:131104400-131109400	Weak transcription	Gastric	stomach
46	chr8:131104400-131109400	Weak transcription	Lung	lung
47	chr8:131104400-131113000	Weak transcription	Primary B cells from cord blood	blood
48	chr8:131104400-131114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:131104400-131117600	Weak transcription	Fetal Brain Female	brain
50	chr8:131104400-131118000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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