Variant report

Variant	rs56409104
Chromosome Location	chr15:31441165-31441166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72712260	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72714651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
10	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31439200-31441400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr15:31439200-31441600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr15:31439200-31441800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:31439400-31441600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:31439600-31441400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:31439600-31441400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:31439600-31441600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:31439600-31441800	Enhancers	Fetal Brain Male	brain
9	chr15:31439600-31444800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:31439800-31441400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:31439800-31441600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:31439800-31441600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:31439800-31441600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:31439800-31441800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:31439800-31442800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:31439800-31444200	Enhancers	Thymus	Thymus
17	chr15:31440000-31441200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr15:31440000-31441600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr15:31440000-31441600	Enhancers	Brain Germinal Matrix	brain
20	chr15:31440200-31441400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr15:31440200-31441400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:31440200-31442400	Enhancers	Fetal Brain Female	brain
23	chr15:31440400-31441200	Flanking Active TSS	HepG2	liver
24	chr15:31440400-31441400	Enhancers	Liver	Liver
25	chr15:31440800-31441200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
26	chr15:31440800-31441600	Enhancers	Primary T cells from cord blood	blood
27	chr15:31440800-31441600	Flanking Active TSS	Fetal Thymus	thymus
28	chr15:31441000-31441400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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