Variant report

Variant	rs56409252
Chromosome Location	chr11:45582738-45582739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45582261..45584715-chr11:45587319..45589536,2	K562	blood:
2	chr11:45167444..45169774-chr11:45581988..45584250,2	MCF-7	breast:
3	chr11:45582261..45584351-chr11:45587015..45588819,2	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4755329	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55889419	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61882911	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45580600-45584200	Enhancers	Fetal Muscle Leg	muscle
2	chr11:45581200-45583200	Enhancers	Fetal Stomach	stomach
3	chr11:45581400-45583200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:45581400-45584000	Enhancers	Fetal Brain Male	brain
5	chr11:45581800-45583000	Enhancers	HSMMtube	muscle
6	chr11:45582000-45582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:45582000-45583000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:45582000-45583400	Enhancers	Brain Germinal Matrix	brain
9	chr11:45582200-45583000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:45582200-45584800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:45582200-45584800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:45582200-45585000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:45582200-45585200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:45582200-45585200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:45582400-45582800	Enhancers	Brain Angular Gyrus	brain
16	chr11:45582600-45582800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:45582600-45583600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:45582600-45584200	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:45582600-45584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:45582600-45585200	Weak transcription	Right Atrium	heart
21	chr11:45582600-45588000	Weak transcription	Fetal Brain Female	brain

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