Variant report

Variant	rs564107030
Chromosome Location	chr15:45751263-45751264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45750656..45751581-chr15:45813573..45814784,3	K562	blood:
2	chr15:45749404..45751481-chr15:45878948..45881186,2	K562	blood:
3	chr15:45750236..45753171-chr15:45878645..45880450,2	MCF-7	breast:
4	chr15:45722040..45723226-chr15:45748321..45751272,60	MCF-7	breast:
5	chr15:45750690..45751653-chr15:45878681..45879387,2	Hela-S3	cervix:
6	chr15:45749728..45751620-chr15:45879079..45880705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260170	Chromatin interaction
ENSG00000179362	Chromatin interaction
ENSG00000166920	Chromatin interaction
ENSG00000104154	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1523	chr15:45749900-45783825	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45749200-45751800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:45749200-45753200	Weak transcription	Gastric	stomach
3	chr15:45749400-45751600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:45749400-45753200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:45749400-45753200	Weak transcription	Esophagus	oesophagus
6	chr15:45749400-45753200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:45749800-45751400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:45749800-45751400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr15:45749800-45751400	Active TSS	Brain Anterior Caudate	brain
10	chr15:45749800-45751400	Active TSS	Brain Hippocampus Middle	brain
11	chr15:45749800-45751400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr15:45749800-45751400	Active TSS	Fetal Kidney	kidney
13	chr15:45749800-45751400	Active TSS	Stomach Smooth Muscle	stomach
14	chr15:45749800-45751600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:45749800-45751600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:45749800-45751600	Active TSS	Right Atrium	heart
17	chr15:45749800-45751600	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr15:45749800-45753800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:45750000-45751400	Active TSS	Brain Angular Gyrus	brain
20	chr15:45750000-45751400	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr15:45750000-45751400	Active TSS	Fetal Lung	lung
22	chr15:45750000-45751400	Active TSS	Fetal Muscle Trunk	muscle
23	chr15:45750000-45751400	Active TSS	NHDF-Ad	bronchial
24	chr15:45750000-45751600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:45750000-45751600	Active TSS	Brain Cingulate Gyrus	brain
26	chr15:45750000-45751600	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr15:45750200-45751400	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr15:45750200-45751600	Active TSS	A549	lung
29	chr15:45750400-45751600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:45750600-45751400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr15:45750600-45753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:45750600-45753600	Weak transcription	Pancreas	Pancrea
33	chr15:45750800-45751400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:45750800-45751400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:45750800-45751400	Active TSS	Adipose Nuclei	Adipose
36	chr15:45750800-45751400	Active TSS	Brain Germinal Matrix	brain
37	chr15:45750800-45751400	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr15:45750800-45751600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
39	chr15:45750800-45751600	Enhancers	Primary B cells from peripheral blood	blood
40	chr15:45750800-45751600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:45750800-45751600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:45750800-45751600	Active TSS	Duodenum Mucosa	Duodenum
43	chr15:45750800-45751600	Active TSS	K562	blood
44	chr15:45750800-45781000	Weak transcription	Stomach Mucosa	stomach
45	chr15:45751000-45751400	Enhancers	Fetal Brain Male	brain
46	chr15:45751000-45751400	Active TSS	Osteobl	bone
47	chr15:45751000-45751600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:45751200-45751400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
49	chr15:45751200-45751400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr15:45751200-45751400	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links