Variant report

Variant	rs56411044
Chromosome Location	chr9:17496159-17496160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16935740	1.00[EUR][1000 genomes]
rs2383030	0.83[EUR][1000 genomes]
rs3808777	1.00[EUR][1000 genomes]
rs55707538	1.00[EUR][1000 genomes]
rs59124736	0.83[EUR][1000 genomes]
rs59180058	1.00[EUR][1000 genomes]
rs60525398	1.00[EUR][1000 genomes]
rs60903479	1.00[EUR][1000 genomes]
rs72709728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892670	chr9:17378776-17507277	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv973451	chr9:17493434-17498572	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17448000-17503400	Weak transcription	Ovary	ovary
2	chr9:17448400-17496400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:17453000-17497000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:17453800-17504200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:17455600-17503000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:17458800-17500400	Weak transcription	HUVEC	blood vessel
7	chr9:17460600-17496200	Weak transcription	HSMM	muscle
8	chr9:17468200-17497200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:17468200-17500000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:17468200-17500200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:17476600-17496800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:17477000-17497000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:17482000-17497400	Weak transcription	Fetal Stomach	stomach
14	chr9:17482000-17499000	Weak transcription	Aorta	Aorta
15	chr9:17483600-17496800	Weak transcription	Fetal Brain Male	brain
16	chr9:17483600-17497800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:17484600-17499000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:17486600-17500000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:17487800-17498200	Weak transcription	Adipose Nuclei	Adipose
20	chr9:17489600-17497600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:17492800-17506400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:17493600-17496400	Weak transcription	Brain Anterior Caudate	brain
23	chr9:17494600-17496200	Strong transcription	Left Ventricle	heart
24	chr9:17495600-17496400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:17495800-17496400	Strong transcription	Dnd41	blood
26	chr9:17495800-17496400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr9:17495800-17496600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:17495800-17497200	Strong transcription	Fetal Lung	lung
29	chr9:17495800-17497800	Strong transcription	Liver	Liver

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