Variant report

Variant	rs564127034
Chromosome Location	chr15:82337389-82337390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv827415	chr15:82333348-82340769	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3344827	chr15:82334647-82340995	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv3375136	chr15:82336922-82339870	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82334800-82337400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
2	chr15:82335000-82340600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:82335200-82338000	Active TSS	Fetal Brain Male	brain
4	chr15:82335400-82337400	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr15:82335400-82340400	Active TSS	HSMMtube	muscle
6	chr15:82335400-82340600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr15:82335400-82341200	Active TSS	Fetal Kidney	kidney
8	chr15:82335600-82338000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
9	chr15:82335600-82338200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:82335600-82340600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr15:82335800-82340400	Active TSS	Colon Smooth Muscle	Colon
12	chr15:82336200-82337400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:82336200-82337400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr15:82336200-82337600	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr15:82336200-82337600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:82336200-82338000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
17	chr15:82336200-82339800	Active TSS	Osteobl	bone
18	chr15:82336200-82340000	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr15:82336200-82340200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:82336200-82340200	Active TSS	NHLF	lung
21	chr15:82336200-82340400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:82336200-82340400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:82336200-82340400	Active TSS	HSMM	muscle
24	chr15:82336400-82337400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
25	chr15:82336400-82337400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
26	chr15:82336400-82337400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
27	chr15:82336400-82337400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr15:82336400-82337600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr15:82336400-82337600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
30	chr15:82336400-82337600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
31	chr15:82336400-82337600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
32	chr15:82336400-82337800	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr15:82336400-82337800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr15:82336400-82338000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:82336400-82338000	Flanking Active TSS	Placenta	Placenta
36	chr15:82336400-82338200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:82336400-82338200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
38	chr15:82336400-82338400	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr15:82336400-82339800	Active TSS	Primary T cells from cord blood	blood
40	chr15:82336400-82340000	Active TSS	NHDF-Ad	bronchial
41	chr15:82336400-82340400	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr15:82336400-82340400	Active TSS	Ovary	ovary
43	chr15:82336600-82337400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr15:82336600-82337400	Flanking Active TSS	Gastric	stomach
45	chr15:82336600-82337400	Bivalent Enhancer	Stomach Mucosa	stomach
46	chr15:82336600-82337600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:82336600-82337600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
48	chr15:82336600-82337600	Flanking Bivalent TSS/Enh	NHEK	skin
49	chr15:82336600-82337800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
50	chr15:82336600-82337800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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