Variant report

Variant	rs564129701
Chromosome Location	chr6:13427723-13427724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13426005..13428428-chr6:13430205..13432759,2	K562	blood:
2	chr6:13426718..13428428-chr6:13429369..13431705,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13419200-13428200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:13419400-13429800	Enhancers	Fetal Lung	lung
3	chr6:13420200-13430000	Enhancers	Fetal Stomach	stomach
4	chr6:13420600-13428000	Weak transcription	Thymus	Thymus
5	chr6:13421400-13427800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:13422000-13427800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:13422000-13428600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:13422200-13432800	Weak transcription	NHDF-Ad	bronchial
9	chr6:13423400-13427800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:13423400-13428000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:13423400-13428200	Weak transcription	K562	blood
12	chr6:13423400-13428800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:13423400-13428800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:13423400-13432200	Weak transcription	A549	lung
15	chr6:13423800-13428000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:13423800-13428000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:13423800-13428800	Weak transcription	Fetal Brain Female	brain
18	chr6:13423800-13431400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:13423800-13431400	Weak transcription	Brain Germinal Matrix	brain
20	chr6:13423800-13433000	Weak transcription	Pancreas	Pancrea
21	chr6:13424000-13427800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:13424000-13428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:13424000-13428000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:13424000-13428000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:13424000-13428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:13424000-13428400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:13424000-13428800	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:13424000-13429000	Weak transcription	Aorta	Aorta
29	chr6:13424000-13429200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:13424200-13428000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:13424200-13428200	Weak transcription	HUVEC	blood vessel
32	chr6:13425200-13429600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:13425200-13430000	Enhancers	Lung	lung
34	chr6:13425200-13430200	Enhancers	Primary B cells from peripheral blood	blood
35	chr6:13425200-13431200	Enhancers	Left Ventricle	heart
36	chr6:13425200-13432200	Enhancers	Right Ventricle	heart
37	chr6:13425400-13427800	Enhancers	Liver	Liver
38	chr6:13425400-13428000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr6:13425400-13428200	Enhancers	Adipose Nuclei	Adipose
40	chr6:13425400-13428400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:13425400-13430200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:13425600-13428000	Enhancers	Brain Hippocampus Middle	brain
43	chr6:13425800-13428600	Weak transcription	Small Intestine	intestine
44	chr6:13425800-13429800	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:13426000-13427800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:13426000-13428200	Weak transcription	Fetal Kidney	kidney
47	chr6:13426000-13428600	Weak transcription	Colonic Mucosa	Colon
48	chr6:13426000-13429800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr6:13426000-13430400	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:13426200-13427800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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