Variant report

Variant	rs56413946
Chromosome Location	chr8:39059208-39059209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10087956	0.88[AMR][1000 genomes]
rs10103435	0.81[AMR][1000 genomes]
rs10112636	0.88[AMR][1000 genomes]
rs11992272	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11994110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994167	0.90[AFR][1000 genomes]
rs12114061	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34023190	0.88[AMR][1000 genomes]
rs4352814	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6981991	0.88[AMR][1000 genomes]
rs6990092	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7002593	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7003149	0.93[AFR][1000 genomes]
rs7008316	0.88[AMR][1000 genomes]
rs7011419	0.88[AMR][1000 genomes]
rs7015352	0.81[AMR][1000 genomes]
rs7015389	0.88[AMR][1000 genomes]
rs73676812	0.93[AFR][1000 genomes]
rs73676819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73676820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816184	0.81[AMR][1000 genomes]
rs7817293	0.93[AFR][1000 genomes]
rs7821206	0.88[AMR][1000 genomes]
rs7821373	0.93[AMR][1000 genomes]
rs7836342	0.91[AFR][1000 genomes]
rs7836976	0.88[AMR][1000 genomes]
rs7843058	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1027443	chr8:38993423-39181079	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539551	chr8:38993423-39181079	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39056200-39064000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:39057000-39063000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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