Variant report

Variant	rs564171574
Chromosome Location	chr11:72286092-72286093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72283857..72286700-chr11:72287444..72290426,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
3	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
5	nsv468633	chr11:72281884-72336564	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv468634	chr11:72281884-72336564	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv555406	chr11:72281884-72336564	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
9	nsv468635	chr11:72284569-72336564	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv555407	chr11:72284569-72336564	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72269600-72295200	Weak transcription	Right Atrium	heart
2	chr11:72276400-72287800	Weak transcription	Fetal Brain Female	brain
3	chr11:72281400-72287400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:72281600-72287400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:72282400-72287600	Weak transcription	Right Ventricle	heart
6	chr11:72282800-72286200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:72282800-72287000	Weak transcription	Left Ventricle	heart
8	chr11:72282800-72295200	Weak transcription	Gastric	stomach
9	chr11:72283000-72292000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:72283200-72288000	Weak transcription	Brain Germinal Matrix	brain
11	chr11:72284000-72288000	Enhancers	Fetal Intestine Large	intestine
12	chr11:72284600-72286200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr11:72284600-72287000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:72284600-72287400	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:72284800-72286400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:72284800-72288000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:72284800-72289200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:72285000-72286200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:72285000-72286800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:72285000-72292200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:72285000-72296200	Weak transcription	Liver	Liver
22	chr11:72285200-72287600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:72285200-72288000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:72285200-72291400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:72285400-72287400	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:72285400-72287800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:72285600-72286400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:72285600-72286400	Bivalent Enhancer	HepG2	liver
29	chr11:72285600-72286600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:72285800-72286200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:72285800-72286200	Active TSS	Spleen	Spleen
32	chr11:72286000-72286200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:72286000-72286400	Enhancers	Hela-S3	cervix
34	chr11:72286000-72286800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:72286000-72287400	Weak transcription	HSMMtube	muscle
36	chr11:72286000-72287600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:72286000-72287800	Weak transcription	Colon Smooth Muscle	Colon

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