Variant report

Variant	rs564174326
Chromosome Location	chr18:29202075-29202076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29197834..29199382-chr18:29200132..29202800,2	MCF-7	breast:
2	chr18:29201280..29203716-chr18:29264569..29266264,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259985	Chromatin interaction
ENSG00000118276	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1816420	chr18:29201648-29207155	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3396305	chr18:29201690-29202175	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29191400-29207000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:29191400-29207800	Weak transcription	Fetal Intestine Large	intestine
3	chr18:29191600-29205200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:29191800-29204800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr18:29191800-29207800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:29192200-29206200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr18:29192400-29217400	Weak transcription	Left Ventricle	heart
8	chr18:29194800-29205000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr18:29194800-29226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr18:29195200-29204800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr18:29195400-29205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr18:29195600-29206000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:29197000-29205200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr18:29197200-29210600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr18:29197400-29207800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr18:29197600-29204800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:29197600-29204800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr18:29197600-29206400	Weak transcription	Fetal Intestine Small	intestine
19	chr18:29197600-29224800	Weak transcription	Brain Anterior Caudate	brain
20	chr18:29197600-29224800	Weak transcription	Brain Germinal Matrix	brain
21	chr18:29197800-29204800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr18:29197800-29206200	Weak transcription	GM12878-XiMat	blood
23	chr18:29198400-29204000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr18:29199200-29212400	Weak transcription	Aorta	Aorta
25	chr18:29199800-29204800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:29199800-29217200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr18:29200000-29202400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr18:29200000-29204800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr18:29200000-29222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr18:29200200-29208600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr18:29200200-29222000	Weak transcription	HMEC	breast
32	chr18:29200400-29210400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr18:29200800-29206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr18:29201200-29204800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr18:29201400-29205400	Weak transcription	Dnd41	blood
36	chr18:29201600-29206200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links