Variant report

Variant	rs564190
Chromosome Location	chr3:34850540-34850541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1316252	0.91[ASN][1000 genomes]
rs1522970	0.89[ASN][1000 genomes]
rs1522972	0.88[ASN][1000 genomes]
rs521098	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs522010	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs565540	0.88[ASN][1000 genomes]
rs631429	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs633214	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs659668	0.88[ASN][1000 genomes]
rs659709	0.88[ASN][1000 genomes]
rs662338	0.89[ASN][1000 genomes]
rs671603	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1010956	chr3:34833573-34878681	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3408584	chr3:34838963-34881489	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs564190	EXOG	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34849000-34850600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:34849000-34850600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:34849200-34850600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:34849400-34852600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:34849400-34855200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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