Variant report

Variant	rs564194
Chromosome Location	chr11:59521080-59521081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
STX3	TF binding region
ENSG00000166900	Chromatin interaction
ENSG00000255538	Chromatin interaction
ENSG00000166902	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59517000-59521200	Weak transcription	K562	blood
2	chr11:59517800-59521200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:59519000-59521600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:59519200-59521200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:59519600-59521600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:59520000-59521600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:59520200-59521200	Enhancers	Fetal Intestine Large	intestine
8	chr11:59520400-59521200	Enhancers	Fetal Intestine Small	intestine
9	chr11:59521000-59521200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:59521000-59521200	Enhancers	Small Intestine	intestine
11	chr11:59521000-59521400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:59521000-59521400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:59521000-59521600	Enhancers	Colonic Mucosa	Colon
14	chr11:59521000-59521600	Bivalent Enhancer	Fetal Brain Male	brain
15	chr11:59521000-59521600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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