Variant report

Variant	rs564235829
Chromosome Location	chr11:104778000-104778001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2757474	chr11:104719593-104798545	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759862	chr11:104719593-104798545	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv1040536	chr11:104757419-104781022	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv20820	chr11:104757749-104781659	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv556217	chr11:104758035-104781313	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv1040784	chr11:104763797-104855878	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
13	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
14	esv3334824	chr11:104776753-104813836	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104769200-104778200	Weak transcription	Left Ventricle	heart
2	chr11:104769200-104778800	Weak transcription	NHLF	lung
3	chr11:104769200-104786400	Weak transcription	Lung	lung
4	chr11:104769200-104786600	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:104769200-104787800	Weak transcription	Fetal Lung	lung
6	chr11:104769400-104785400	Weak transcription	Psoas Muscle	Psoas
7	chr11:104769400-104786800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:104769600-104785800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:104769600-104786800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:104769600-104788000	Weak transcription	Fetal Stomach	stomach
11	chr11:104770200-104778000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:104770400-104786600	Weak transcription	Ovary	ovary
13	chr11:104772200-104782000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:104772400-104778000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:104772400-104778600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:104772600-104778000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:104772600-104778800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:104772600-104783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:104772800-104778200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:104773600-104779800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:104773800-104785600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:104776400-104787200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:104777400-104778000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:104777400-104778200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:104777400-104778600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:104777600-104778400	Strong transcription	Aorta	Aorta
27	chr11:104777600-104778400	Strong transcription	Pancreas	Pancrea
28	chr11:104777600-104779000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:104777600-104779200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr11:104778000-104778200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr11:104778000-104778600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr11:104778000-104779600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:104778000-104779800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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