Variant report

Variant	rs564260204
Chromosome Location	chr2:142326281-142326282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142317711..142321512-chr2:142324977..142327310,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv583215	chr2:142324505-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1798303	chr2:142324505-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1799576	chr2:142324505-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1800912	chr2:142324505-142339047	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv583216	chr2:142324536-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv1795304	chr2:142324536-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1797643	chr2:142324536-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1798632	chr2:142324536-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1799553	chr2:142324536-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1800728	chr2:142324536-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1801568	chr2:142324536-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv15000	chr2:142325013-142328209	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3458444	chr2:142325151-142329147	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3458443	chr2:142325200-142329121	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3458442	chr2:142325216-142329108	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3410335	chr2:142325263-142329066	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1801280	chr2:142325268-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1802179	chr2:142325268-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv583217	chr2:142325268-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv1794971	chr2:142325268-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv1797107	chr2:142325268-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1799700	chr2:142325268-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv1802386	chr2:142325268-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv3458440	chr2:142325288-142329051	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv3458445	chr2:142325302-142329047	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv583218	chr2:142325345-142327099	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv583219	chr2:142325345-142327244	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv583220	chr2:142325345-142327311	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv1798371	chr2:142325345-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv583221	chr2:142325345-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv1791858	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv1795807	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv1798721	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv1801630	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv1802509	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv1803244	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv1803622	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv583222	chr2:142325345-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
46	nsv583223	chr2:142325345-142327660	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
47	nsv583224	chr2:142325345-142329146	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
48	nsv583225	chr2:142325505-142327311	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	nsv583226	chr2:142325505-142327418	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv583227	chr2:142325505-142327536	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142315200-142327800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:142320400-142327800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142323400-142327800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:142323800-142328000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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