Variant report

Variant	rs564290011
Chromosome Location	chr15:73284328-73284329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73281450..73284379-chr15:73286906..73289508,2	MCF-7	breast:
2	chr15:73283925..73285701-chr15:73287876..73289544,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv528233	chr15:73284181-73287152	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73278000-73286200	Weak transcription	Fetal Brain Male	brain
2	chr15:73282800-73284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:73282800-73285600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr15:73283200-73285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:73283400-73285800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:73283600-73286000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:73283800-73285200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:73283800-73285800	Enhancers	Osteobl	bone
9	chr15:73284000-73284400	Enhancers	NH-A	brain
10	chr15:73284000-73284600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:73284000-73284800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:73284000-73285200	Enhancers	Colon Smooth Muscle	Colon
13	chr15:73284000-73285200	Enhancers	NHLF	lung
14	chr15:73284000-73287200	Enhancers	Ovary	ovary
15	chr15:73284000-73289800	Enhancers	Fetal Lung	lung
16	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:73284200-73284800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:73284200-73285000	Enhancers	Lung	lung
19	chr15:73284200-73285800	Enhancers	Psoas Muscle	Psoas
20	chr15:73284200-73286800	Weak transcription	NHEK	skin
21	chr15:73284200-73287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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