Variant report

Variant	rs564305544
Chromosome Location	chr6:45487052-45487053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45389741..45391905-chr6:45485507..45488244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1019561	chr6:45485826-45535222	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv538214	chr6:45485826-45535222	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45465000-45521600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:45466800-45488200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:45466800-45497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:45467200-45487800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:45474000-45489000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:45479000-45500000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:45480200-45488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:45481000-45500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:45481200-45487800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:45481400-45488200	Weak transcription	Fetal Lung	lung
11	chr6:45481400-45488600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:45481400-45500200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:45481400-45514600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:45482000-45488400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:45482000-45490800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:45482000-45500000	Weak transcription	NHDF-Ad	bronchial
17	chr6:45482200-45488600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:45482400-45494600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:45482600-45487600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:45482600-45487600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:45482600-45487800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:45482600-45488000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:45482600-45488200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:45482600-45488200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:45482600-45489800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:45482600-45490200	Weak transcription	Dnd41	blood
27	chr6:45482600-45490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:45482600-45490400	Weak transcription	NHLF	lung
29	chr6:45482600-45500200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:45482600-45503600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:45482800-45488000	Weak transcription	Stomach Mucosa	stomach
32	chr6:45482800-45514800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:45483000-45488600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:45483000-45490400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:45483600-45487800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:45483800-45487800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:45483800-45488000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:45484000-45488000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:45484200-45488000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:45484200-45488200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:45484400-45509400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:45484400-45514600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:45484800-45487800	Weak transcription	NH-A	brain
44	chr6:45485200-45488800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:45485200-45489800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:45486000-45487200	Genic enhancers	Osteobl	bone
47	chr6:45486000-45489000	Genic enhancers	HSMM	muscle
48	chr6:45486200-45488600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:45486200-45488600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:45486400-45488600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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