Variant report

Variant	rs564318826
Chromosome Location	chr12:4462813-4462814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4462645..4463521-chr12:4635539..4636424,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv468985	chr12:4423612-4473329	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv557122	chr12:4423612-4473329	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv519278	chr12:4441906-4475194	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv528492	chr12:4462161-4473329	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv523578	chr12:4462505-4467921	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4431200-4465800	Weak transcription	Psoas Muscle	Psoas
2	chr12:4431600-4463400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:4431600-4465000	Weak transcription	Pancreas	Pancrea
4	chr12:4432200-4463400	Weak transcription	Small Intestine	intestine
5	chr12:4432200-4463600	Weak transcription	Colonic Mucosa	Colon
6	chr12:4433200-4463200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:4434000-4465000	Weak transcription	Esophagus	oesophagus
8	chr12:4441000-4465600	Weak transcription	Fetal Intestine Large	intestine
9	chr12:4441800-4463600	Weak transcription	Brain Substantia Nigra	brain
10	chr12:4443400-4464800	Weak transcription	Fetal Brain Male	brain
11	chr12:4443600-4463400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:4447400-4464800	Weak transcription	Right Ventricle	heart
13	chr12:4447600-4464400	Weak transcription	Spleen	Spleen
14	chr12:4447600-4464800	Weak transcription	Brain Germinal Matrix	brain
15	chr12:4447800-4464200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr12:4448000-4464800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:4449000-4463800	Weak transcription	Brain Anterior Caudate	brain
18	chr12:4449200-4465000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:4449400-4466000	Weak transcription	NHDF-Ad	bronchial
20	chr12:4450000-4465000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:4455600-4465000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:4456000-4463000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:4456000-4463600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:4456000-4463800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:4456000-4463800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:4456000-4463800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr12:4456000-4463800	Strong transcription	HMEC	breast
28	chr12:4456000-4464000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr12:4456000-4464800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:4456000-4464800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr12:4456000-4465200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:4456400-4464800	Weak transcription	Brain Angular Gyrus	brain
33	chr12:4457600-4463600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr12:4457600-4463800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr12:4457600-4463800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:4457600-4464000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr12:4457800-4463800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:4458000-4464800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:4458200-4463600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr12:4459000-4463600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr12:4459000-4463800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:4460200-4463000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr12:4460200-4463200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr12:4460200-4463800	Strong transcription	Dnd41	blood
45	chr12:4460400-4463000	Strong transcription	Aorta	Aorta
46	chr12:4460400-4463000	Strong transcription	Lung	lung
47	chr12:4460400-4463000	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:4460400-4463800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr12:4461200-4465000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:4461400-4463000	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links