Variant report

Variant	rs564340175
Chromosome Location	chr8:63997847-63997848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:63949699..63952423-chr8:63997523..63999992,2	K562	blood:
2	chr8:63983680..63986260-chr8:63995711..63998023,2	MCF-7	breast:
3	chr8:63996810..63998343-chr8:64003518..64005481,2	K562	blood:

Variant related genes	Relation type
ENSG00000137563	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv465701	chr8:63951237-64080486	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv611448	chr8:63951237-64080486	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3373017	chr8:63989447-64014250	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3445521	chr8:63989447-64017270	Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3445164	chr8:63997798-63999646	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63997200-63998800	Active TSS	Liver	Liver
2	chr8:63997400-63998000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:63997400-63998800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr8:63997400-63999200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:63997400-63999200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:63997600-63998000	Enhancers	Pancreas	Pancrea
7	chr8:63997600-63998000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr8:63997600-63998200	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr8:63997600-63998200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
10	chr8:63997600-63998600	Active TSS	Fetal Muscle Trunk	muscle
11	chr8:63997600-63999000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:63997600-63999000	Active TSS	A549	lung
13	chr8:63997600-63999200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr8:63997600-63999200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr8:63997600-63999200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr8:63997600-63999200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
17	chr8:63997600-63999200	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr8:63997600-63999200	Active TSS	Rectal Smooth Muscle	rectum
19	chr8:63997600-64000000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr8:63997800-63998000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:63997800-63998000	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
22	chr8:63997800-63998000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
23	chr8:63997800-63998000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:63997800-63998000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
25	chr8:63997800-63998000	Active TSS	Fetal Intestine Large	intestine
26	chr8:63997800-63998000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
27	chr8:63997800-63998000	Active TSS	Fetal Stomach	stomach
28	chr8:63997800-63998000	Active TSS	Ovary	ovary
29	chr8:63997800-63998000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
30	chr8:63997800-63998000	Bivalent/Poised TSS	NHDF-Ad	bronchial
31	chr8:63997800-63998200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr8:63997800-63998200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:63997800-63998200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:63997800-63998200	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr8:63997800-63998200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:63997800-63998200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
37	chr8:63997800-63998200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr8:63997800-63998200	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
39	chr8:63997800-63998200	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr8:63997800-63998200	Flanking Active TSS	HepG2	liver
41	chr8:63997800-63998200	Flanking Active TSS	NH-A	brain
42	chr8:63997800-63998400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr8:63997800-63998400	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr8:63997800-63998400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
45	chr8:63997800-63998600	Bivalent/Poised TSS	NHEK	skin
46	chr8:63997800-63998800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:63997800-63998800	Active TSS	Muscle Satellite Cultured Cells	--
48	chr8:63997800-63998800	Active TSS	Placenta	Placenta
49	chr8:63997800-63999000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
50	chr8:63997800-63999000	Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links