Variant report

Variant	rs564340969
Chromosome Location	chr1:56431836-56431837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56425800-56441000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:56426800-56432800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:56427200-56434000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56430400-56433800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56431000-56432600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:56431200-56432200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:56431400-56432200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:56431400-56432400	Enhancers	NHEK	skin
9	chr1:56431600-56432200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:56431600-56432400	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:56431600-56432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:56431800-56432000	Enhancers	NHDF-Ad	bronchial
13	chr1:56431800-56432200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:56431800-56432200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:56431800-56432200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:56431800-56432200	Enhancers	Dnd41	blood
17	chr1:56431800-56432200	Flanking Active TSS	Osteobl	bone
18	chr1:56431800-56432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links