Variant report

Variant	rs564354938
Chromosome Location	chr7:124365552-124365553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1027091	chr7:124311742-124388908	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1802433	chr7:124365503-124385252	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124363200-124365600	Enhancers	HepG2	liver
2	chr7:124363800-124368800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:124364200-124365600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:124364200-124365800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:124364200-124365800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:124364200-124366000	Active TSS	Brain Hippocampus Middle	brain
7	chr7:124364400-124365800	Weak transcription	Brain Substantia Nigra	brain
8	chr7:124364400-124366000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:124364600-124365600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:124364800-124369600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:124365000-124365600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:124365000-124365800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:124365200-124365600	Active TSS	Brain Anterior Caudate	brain
14	chr7:124365200-124365800	Active TSS	Brain Angular Gyrus	brain
15	chr7:124365400-124365800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:124365400-124365800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:124365400-124365800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr7:124365400-124366000	Active TSS	Brain Cingulate Gyrus	brain
19	chr7:124365400-124370000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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