Variant report

Variant	rs564365473
Chromosome Location	chr6:37532688-37532689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv522098	chr6:37532103-37545923	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522466	chr6:37532103-37545923	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:37521200-37533800	Enhancers	Primary B cells from cord blood	blood
3	chr6:37522200-37533600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:37528200-37533000	Enhancers	Brain Germinal Matrix	brain
5	chr6:37528400-37533400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:37528400-37533600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:37528400-37533800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:37528600-37533800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:37528600-37533800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:37528800-37532800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:37528800-37533200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:37528800-37533200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:37528800-37535600	Enhancers	Fetal Brain Male	brain
14	chr6:37529200-37533600	Weak transcription	Spleen	Spleen
15	chr6:37530600-37532800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:37531000-37533200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:37531600-37532800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:37531600-37533000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
19	chr6:37531600-37533000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:37531600-37533200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:37531800-37533200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:37531800-37533200	Enhancers	Fetal Thymus	thymus
23	chr6:37532000-37533000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:37532400-37532800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr6:37532400-37532800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:37532400-37533000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:37532400-37533200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:37532400-37533400	Enhancers	Fetal Brain Female	brain
29	chr6:37532400-37533800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr6:37532600-37532800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
31	chr6:37532600-37532800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
32	chr6:37532600-37533000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:37532600-37533000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
34	chr6:37532600-37533200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
35	chr6:37532600-37533400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:37532600-37533600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:37532600-37533600	Enhancers	Right Atrium	heart
38	chr6:37532600-37534200	Flanking Active TSS	GM12878-XiMat	blood

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