Variant report

Variant	rs564445960
Chromosome Location	chr2:179522337-179522338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834468	chr2:179351116-179533625	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2757841	chr2:179409072-179608242	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2759103	chr2:179409072-179608242	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1813473	chr2:179515899-179540690	Genic enhancers Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv10202	chr2:179516350-179528978	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv1801893	chr2:179516812-179528326	Strong transcription Weak transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv1810414	chr2:179516812-179528326	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv1813898	chr2:179516812-179528326	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv1823220	chr2:179516812-179528326	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1844116	chr2:179516812-179528672	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv933207	chr2:179517034-179527907	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv934297	chr2:179517160-179527907	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv16126	chr2:179518009-179528400	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv821308	chr2:179518009-179528400	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv933249	chr2:179519071-179527850	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv934037	chr2:179519071-179527907	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv961536	chr2:179519319-179527986	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv933854	chr2:179519325-179527907	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv583754	chr2:179519922-179525337	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
20	nsv583755	chr2:179519922-179528335	Strong transcription Weak transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179483200-179655400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:179493000-179620800	Weak transcription	HSMM	muscle
3	chr2:179497800-179530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:179501000-179541800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:179514400-179528400	Weak transcription	Fetal Heart	heart
6	chr2:179516800-179528400	Weak transcription	Primary B cells from cord blood	blood
7	chr2:179517800-179528400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:179518000-179528200	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:179518000-179528200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:179518000-179528400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:179518000-179529000	Weak transcription	Psoas Muscle	Psoas
12	chr2:179518000-179533400	Weak transcription	Primary T cells from cord blood	blood
13	chr2:179518000-179536000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr2:179518000-179540200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr2:179518200-179528200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:179518200-179528200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:179518200-179528200	Weak transcription	HSMMtube	muscle
18	chr2:179518200-179528600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:179518400-179528400	Weak transcription	Left Ventricle	heart
20	chr2:179519000-179528400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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