Variant report

Variant	rs564454344
Chromosome Location	chr6:127980188-127980189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:127980151-127980201	GM12891	blood:	n/a
2	chr6:127980151-127980201	BJ	skin:	n/a
3	chr6:127980151-127980201	LNCaP	prostate:	n/a
4	chr6:127980151-127980201	SK-N-MC	brain:	n/a
5	chr6:127980151-127980201	NB4	blood:	n/a
6	chr6:127980151-127980201	ECC-1	luminal epithelium:	n/a
7	chr6:127980151-127980201	PFSK-1	brain:	n/a
8	chr6:127980151-127980201	Caco-2	colon:	n/a
9	chr6:127980151-127980201	AG04449	skin:	fetal
10	chr6:127980151-127980201	NHBE	bronchial:	n/a
11	chr6:127980151-127980201	A549	lung:	n/a
12	chr6:127980151-127980201	T-47D	breast:	n/a
13	chr6:127980151-127980201	SAEC	small airway:	n/a
14	chr6:127980151-127980201	HepG2	liver:	n/a
15	chr6:127980151-127980201	Hepatocyte	liver:	n/a
16	chr6:127980151-127980201	HUVEC	blood vessel:	n/a
17	chr6:127980151-127980201	HPAEpiC	pulmonary alveolar:	n/a
18	chr6:127980151-127980201	HL-60	blood:	n/a
19	chr6:127980151-127980201	HCT-116	colon:	n/a
20	chr6:127980151-127980201	AG10803	skin:	n/a
21	chr6:127980151-127980201	NT2-D1	testis:	n/a
22	chr6:127980151-127980201	HRCEpiC	kidney:	n/a
23	chr6:127980151-127980201	MCF-7	breast:	n/a
24	chr6:127980151-127980201	HNPCEpiC	eye:	n/a
25	chr6:127980151-127980201	Jurkat	blood:	n/a
26	chr6:127980151-127980201	H1-hESC	embryonic stem cell:	embryo
27	chr6:127980151-127980201	SKMC	muscle:	n/a
28	chr6:127980151-127980201	MCF10A-Er-Src	breast:	n/a
29	chr6:127980151-127980201	CMK	blood:	n/a
30	chr6:127980151-127980201	HEK293	kidney:	embryo
31	chr6:127980151-127980201	ProgFib	skin:	n/a
32	chr6:127980151-127980201	HCPEpiC	choroid plexus:	n/a
33	chr6:127980151-127980201	AG04450	lung:	fetal
34	chr6:127980151-127980201	RPTEC	kidney:	n/a
35	chr6:127980151-127980201	SK-N-SH_RA	brain:	n/a
36	chr6:127980151-127980201	PrEC	prostate:	n/a
37	chr6:127980151-127980201	HCF	heart:	n/a
38	chr6:127980151-127980201	HRPEpiC	eye:	n/a
39	chr6:127980151-127980201	Hela-S3	cervix:	n/a
40	chr6:127980151-127980201	HRE	kidney:	n/a
41	chr6:127980151-127980201	U87	brain:	n/a
42	chr6:127980151-127980201	GM12878	blood:	n/a
43	chr6:127980151-127980201	AG09309	skin:	n/a
44	chr6:127980151-127980201	GM06990	blood:	n/a
45	chr6:127980151-127980201	HIPEpiC	eye:	n/a
46	chr6:127980151-127980201	GM12892	blood:	n/a
47	chr6:127980151-127980201	AoSMC	blood vessel:	n/a
48	chr6:127980151-127980201	AG09319	gingival:	n/a
49	chr6:127980151-127980201	SK-N-SH	brain:	n/a
50	chr6:127980151-127980201	BE2_C	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000260212	CpG island
ENSG00000218187	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886638	chr6:127954614-128087172	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886639	chr6:127954614-128109244	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886640	chr6:127961263-128096587	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886641	chr6:127971136-128085283	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv886642	chr6:127971136-128096587	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv886643	chr6:127971136-128109244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv886644	chr6:127976408-128109244	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv886645	chr6:127977160-128085283	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv886646	chr6:127977160-128087172	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv886647	chr6:127977160-128109244	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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