Variant report

Variant	rs564476
Chromosome Location	chr11:65004309-65004310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10895991	0.84[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs17146724	0.83[CHB][hapmap]
rs3825073	0.87[MKK][hapmap]
rs6591179	0.83[CHB][hapmap]
rs7114754	0.82[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64993600-65011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:64993800-65010800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:64993800-65010800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:64994200-65007200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:64997800-65009400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:65003400-65004800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:65003600-65004400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:65004000-65004600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:65004000-65004600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:65004000-65004800	Enhancers	Fetal Thymus	thymus
11	chr11:65004000-65009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:65004200-65004600	Weak transcription	Esophagus	oesophagus
13	chr11:65004200-65005800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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