Variant report

Variant	rs564522924
Chromosome Location	chr6:147424940-147424941
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147420322..147423479-chr6:147424445..147428438,5	K562	blood:
2	chr6:147419431..147422088-chr6:147424854..147426764,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv522096	chr6:147424880-147443480	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147421800-147427800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:147422000-147427800	Weak transcription	Osteobl	bone
3	chr6:147422000-147428000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:147423800-147426000	Enhancers	Primary T cells from cord blood	blood
5	chr6:147424400-147425400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:147424400-147425800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:147424400-147426400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:147424600-147425600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:147424600-147425800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:147424600-147425800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:147424600-147425800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:147424600-147425800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:147424600-147425800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:147424600-147425800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:147424600-147425800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:147424600-147425800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:147424600-147426400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:147424800-147425200	Enhancers	Dnd41	blood
19	chr6:147424800-147425200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:147424800-147425800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr6:147424800-147425800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:147424800-147429400	Weak transcription	Primary T cells fromperipheralblood	blood

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