Variant report

Variant	rs564542826
Chromosome Location	chr1:193627153-193627154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv33988	chr1:193626177-193634262	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193622000-193627400	Weak transcription	Fetal Brain Male	brain
2	chr1:193624000-193627400	Weak transcription	Fetal Heart	heart
3	chr1:193624400-193627200	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:193624400-193628600	Weak transcription	Left Ventricle	heart
5	chr1:193624400-193629000	Weak transcription	Aorta	Aorta
6	chr1:193624600-193627400	Weak transcription	Small Intestine	intestine
7	chr1:193624800-193629000	Weak transcription	HSMMtube	muscle
8	chr1:193626000-193627200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:193626000-193635400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:193626400-193627400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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