Variant report

Variant	rs564558169
Chromosome Location	chr4:6897024-6897025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6895522..6898076-chr4:6987277..6989270,2	K562	blood:
2	chr4:6891429..6893781-chr4:6896508..6898133,2	K562	blood:
3	chr4:6734514..6737444-chr4:6894118..6897087,2	K562	blood:
4	chr4:6889897..6899719-chr4:6906701..6919549,30	K562	blood:
5	chr4:6891733..6899525-chr4:6905110..6914778,23	K562	blood:
6	chr4:6729953..6732617-chr4:6895419..6897381,2	K562	blood:
7	chr4:6894765..6897271-chr4:7068956..7071796,2	MCF-7	breast:
8	chr4:6896553..6898148-chr4:7068818..7071167,2	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4216	chr4:6876592-6915629	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3491705	chr4:6894126-6901649	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3491706	chr4:6894126-6901649	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv18180	chr4:6895182-6900570	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3464339	chr4:6895451-6901549	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2551916	chr4:6896381-6900776	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3494731	chr4:6896451-6901499	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464338	chr4:6896476-6899924	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3464340	chr4:6896476-6899924	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3494728	chr4:6896526-6900946	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3468303	chr4:6896756-6900820	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6894400-6897400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr4:6894400-6897600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:6894400-6900600	Weak transcription	Primary T cells from cord blood	blood
4	chr4:6894600-6903000	Weak transcription	HSMM	muscle
5	chr4:6894600-6903600	Weak transcription	Right Atrium	heart
6	chr4:6894800-6897600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:6894800-6900600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:6894800-6900600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:6895400-6900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:6895400-6900600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:6895400-6900600	Weak transcription	Fetal Thymus	thymus
12	chr4:6895400-6900600	Weak transcription	GM12878-XiMat	blood
13	chr4:6895400-6900800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:6895600-6900600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:6895800-6899400	Enhancers	HepG2	liver
16	chr4:6895800-6900600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:6895800-6901800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:6896000-6897400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:6896000-6897600	Weak transcription	K562	blood
20	chr4:6896400-6897200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr4:6896400-6900600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:6896400-6900600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:6896400-6900800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:6896800-6897200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr4:6896800-6900600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:6896800-6906200	Weak transcription	Liver	Liver
27	chr4:6896800-6909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:6897000-6900600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:6897000-6900600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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