Variant report

Variant	rs564561328
Chromosome Location	chr8:103123712-103123713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103117364..103120108-chr8:103121907..103124531,3	MCF-7	breast:
2	chr8:103119168..103122650-chr8:103122688..103124548,3	K562	blood:
3	chr8:103103923..103106392-chr8:103121808..103124268,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv891239	chr8:103056517-103162638	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891240	chr8:103070301-103162638	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891241	chr8:103079505-103162638	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv523654	chr8:103121989-103124212	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103119200-103135200	Weak transcription	Spleen	Spleen
2	chr8:103120400-103124400	Weak transcription	Gastric	stomach
3	chr8:103120400-103126200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:103120400-103126400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:103120400-103126800	Weak transcription	Esophagus	oesophagus
6	chr8:103120400-103129200	Weak transcription	Pancreas	Pancrea
7	chr8:103120400-103133200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:103120400-103133400	Weak transcription	Fetal Brain Female	brain
9	chr8:103120400-103134200	Weak transcription	Lung	lung
10	chr8:103120400-103135400	Weak transcription	Placenta	Placenta
11	chr8:103120600-103125600	Weak transcription	Brain Angular Gyrus	brain
12	chr8:103120800-103124400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:103120800-103124600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:103120800-103126200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:103120800-103129400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:103120800-103134200	Weak transcription	Fetal Stomach	stomach
17	chr8:103121000-103124200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr8:103121000-103126400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:103121200-103123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:103121200-103124400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:103121200-103124400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:103121200-103124600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:103121200-103124800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:103121400-103124000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:103121400-103124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr8:103121400-103124400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr8:103121400-103124400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr8:103121400-103124400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:103121400-103124800	Weak transcription	Psoas Muscle	Psoas
30	chr8:103121400-103126200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:103121400-103126200	Weak transcription	Right Atrium	heart
32	chr8:103121400-103126200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:103121400-103126600	Weak transcription	Adipose Nuclei	Adipose
34	chr8:103121400-103131400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:103121600-103133600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:103121800-103124600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr8:103121800-103124600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr8:103121800-103124600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:103121800-103125000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:103121800-103126200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:103121800-103133200	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:103122000-103124800	Weak transcription	GM12878-XiMat	blood
43	chr8:103122000-103126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:103122200-103125200	Enhancers	Aorta	Aorta
45	chr8:103122800-103124400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr8:103122800-103124400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:103122800-103126200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr8:103122800-103127800	Enhancers	Fetal Heart	heart
49	chr8:103123000-103125800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:103123400-103125200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links