Variant report

Variant	rs564599092
Chromosome Location	chr4:16366616-16366617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:16366593-16366643	SKMC	muscle:	n/a
2	chr4:16366593-16366643	HUVEC	blood vessel:	n/a
3	chr4:16366593-16366643	HRE	kidney:	n/a
4	chr4:16366593-16366643	A549	lung:	n/a
5	chr4:16366593-16366643	HCM	heart:	n/a
6	chr4:16366593-16366643	HL-60	blood:	n/a
7	chr4:16366593-16366643	PrEC	prostate:	n/a
8	chr4:16366593-16366643	AG04449	skin:	fetal
9	chr4:16366593-16366643	HIPEpiC	eye:	n/a
10	chr4:16366593-16366643	HCT-116	colon:	n/a
11	chr4:16366593-16366643	AG09309	skin:	n/a
12	chr4:16366593-16366643	MCF-7	breast:	n/a
13	chr4:16366593-16366643	HPAEpiC	pulmonary alveolar:	n/a
14	chr4:16366593-16366643	NHBE	bronchial:	n/a
15	chr4:16366593-16366643	GM12892	blood:	n/a
16	chr4:16366593-16366643	SK-N-MC	brain:	n/a
17	chr4:16366593-16366643	HEEpiC	esophagus:	n/a
18	chr4:16366593-16366643	AoSMC	blood vessel:	n/a
19	chr4:16366593-16366643	NHDF-neo	bronchial:	n/a
20	chr4:16366593-16366643	HepG2	liver:	n/a
21	chr4:16366593-16366643	SK-N-SH	brain:	n/a
22	chr4:16366593-16366643	MCF10A-Er-Src	breast:	n/a
23	chr4:16366593-16366643	PFSK-1	brain:	n/a
24	chr4:16366593-16366643	ovcar-3	ovarian:	n/a
25	chr4:16366593-16366643	Jurkat	blood:	n/a
26	chr4:16366593-16366643	LNCaP	prostate:	n/a
27	chr4:16366593-16366643	SK-N-SH_RA	brain:	n/a
28	chr4:16366593-16366643	AG09319	gingival:	n/a
29	chr4:16366593-16366643	IMR90	lung:	fetal
30	chr4:16366593-16366643	GM19239	blood:	n/a
31	chr4:16366593-16366643	HCPEpiC	choroid plexus:	n/a
32	chr4:16366593-16366643	HNPCEpiC	eye:	n/a
33	chr4:16366593-16366643	K562	blood:	n/a
34	chr4:16366593-16366643	HCF	heart:	n/a
35	chr4:16366593-16366643	GM06990	blood:	n/a
36	chr4:16366593-16366643	HRPEpiC	eye:	n/a
37	chr4:16366593-16366643	GM12878	blood:	n/a
38	chr4:16366593-16366643	AG10803	skin:	n/a
39	chr4:16366593-16366643	HMEC	breast:	n/a
40	chr4:16366593-16366643	NH-A	brain:	n/a
41	chr4:16366593-16366643	BJ	skin:	n/a
42	chr4:16366593-16366643	ProgFib	skin:	n/a
43	chr4:16366593-16366643	T-47D	breast:	n/a
44	chr4:16366593-16366643	NB4	blood:	n/a
45	chr4:16366593-16366643	PANC-1	pancreas:	n/a
46	chr4:16366593-16366643	ECC-1	luminal epithelium:	n/a
47	chr4:16366593-16366643	BE2_C	brain:	n/a
48	chr4:16366593-16366643	HEK293	kidney:	embryo
49	chr4:16366593-16366643	Hepatocyte	liver:	n/a
50	chr4:16366593-16366643	GM12891	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:16360973..16364086-chr4:16365820..16368451,4	MCF-7	breast:
2	chr4:16364655..16366735-chr4:16377619..16379236,2	K562	blood:
3	chr4:16361224..16363467-chr4:16364801..16367359,3	MCF-7	breast:
4	chr4:16363037..16365847-chr4:16366056..16368462,2	K562	blood:

No data

Variant related genes	Relation type
ZEB2P1	CpG island
ENSG00000249506	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv999436	chr4:16335379-16375164	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv432582	chr4:16335379-16379580	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv593779	chr4:16336013-16375164	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1000106	chr4:16338191-16375164	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1005625	chr4:16339728-16375164	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1004586	chr4:16341873-16375164	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16366600-16367200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:16366600-16367200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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