Variant report

Variant rs564619592
Chromosome Location chr3:50192312-50192313
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50187600-50192400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:50189600-50193000 Weak transcription Fetal Lung lung
3 chr3:50190000-50193000 Weak transcription Placenta Amnion Placenta Amnion
4 chr3:50191200-50192400 Weak transcription NHEK skin
5 chr3:50191600-50193200 Bivalent/Poised TSS Primary T cells from cord blood blood
6 chr3:50191600-50193400 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
7 chr3:50191800-50192400 Flanking Active TSS Primary B cells from cord blood blood
8 chr3:50191800-50192400 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
9 chr3:50191800-50192600 Enhancers Liver Liver
10 chr3:50191800-50193000 Active TSS Brain Anterior Caudate brain
11 chr3:50191800-50193200 Active TSS Rectal Smooth Muscle rectum
12 chr3:50191800-50193400 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr3:50191800-50193400 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
14 chr3:50191800-50193400 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
15 chr3:50191800-50193400 Active TSS Fetal Brain Female brain
16 chr3:50191800-50193400 Active TSS Hela-S3 cervix
17 chr3:50191800-50194400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr3:50192000-50192400 Enhancers Brain Angular Gyrus brain
19 chr3:50192000-50192400 Bivalent/Poised TSS Fetal Intestine Large intestine
20 chr3:50192000-50192600 Bivalent/Poised TSS Foreskin Melanocyte Primary Cells skin03 Skin
21 chr3:50192000-50192600 Weak transcription Fetal Kidney kidney
22 chr3:50192000-50193000 Active TSS HUES48 Cell Line embryonic stem cell
23 chr3:50192000-50193000 Active TSS Primary T helper naive cells fromperipheralblood blood
24 chr3:50192000-50193000 Weak transcription Fetal Heart heart
25 chr3:50192000-50193000 Active TSS HSMMtube muscle
26 chr3:50192000-50193200 Bivalent/Poised TSS H9 Derived Neuron Cultured Cells ES cell derived
27 chr3:50192000-50193200 Active TSS iPS-15b Cell Line embryonic stem cell
28 chr3:50192000-50193200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
29 chr3:50192000-50193200 Bivalent/Poised TSS Brain Cingulate Gyrus brain
30 chr3:50192000-50193200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
31 chr3:50192000-50193200 Weak transcription Fetal Brain Male brain
32 chr3:50192000-50193200 Active TSS Rectal Mucosa Donor 31 rectum
33 chr3:50192000-50193200 Active TSS A549 lung
34 chr3:50192000-50193200 Bivalent/Poised TSS HSMM muscle
35 chr3:50192000-50193400 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
36 chr3:50192000-50193400 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr3:50192000-50193400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
38 chr3:50192000-50193400 Active TSS K562 blood
39 chr3:50192000-50193600 Active TSS Aorta Aorta
40 chr3:50192000-50193600 Active TSS Small Intestine intestine
41 chr3:50192000-50193800 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
42 chr3:50192000-50194400 Active TSS Pancreatic Islets Pancreatic Islet
43 chr3:50192000-50194400 Active TSS Psoas Muscle Psoas
44 chr3:50192000-50194800 Active TSS H9 Cell Line embryonic stem cell
45 chr3:50192000-50194800 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr3:50192000-50194800 Active TSS Gastric stomach
47 chr3:50192000-50194800 Active TSS Left Ventricle heart
48 chr3:50192000-50194800 Active TSS Right Atrium heart
49 chr3:50192200-50192400 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr3:50192200-50192400 Bivalent/Poised TSS Primary T helper cells fromperipheralblood blood

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