Variant report

Variant	rs564634071
Chromosome Location	chr5:100184507-100184508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv980990	chr5:100183442-100190408	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
2	chr5:100174000-100190600	Weak transcription	Fetal Lung	lung
3	chr5:100177400-100188400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:100177600-100185800	Strong transcription	Dnd41	blood
5	chr5:100177600-100215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:100177800-100188200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:100177800-100188400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:100177800-100188800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:100178200-100218400	Weak transcription	Placenta	Placenta
10	chr5:100178400-100185400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:100178400-100188400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:100179200-100188000	ZNF genes & repeats	GM12878-XiMat	blood
13	chr5:100180800-100185200	Weak transcription	Fetal Thymus	thymus
14	chr5:100180800-100188000	Weak transcription	Primary T cells from cord blood	blood
15	chr5:100180800-100188200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:100182000-100187800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:100182400-100187400	Weak transcription	Primary B cells from cord blood	blood
18	chr5:100182600-100185200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:100182600-100187800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:100183000-100184800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:100183000-100187800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:100183200-100184800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr5:100183200-100185200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:100183200-100187400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:100183200-100187800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:100183400-100184800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr5:100183600-100184800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr5:100183600-100184800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:100183600-100187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:100183600-100187800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:100184000-100184600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr5:100184000-100188600	Weak transcription	HUVEC	blood vessel

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