Variant report

Variant	rs564639861
Chromosome Location	chr2:149214480-149214481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753542	chr2:149004714-149268503	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1012275	chr2:149031668-149316793	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1000101	chr2:149165813-149361220	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv518198	chr2:149210869-149219983	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149174200-149221400	Weak transcription	Primary T cells from cord blood	blood
2	chr2:149174400-149221400	Weak transcription	Primary B cells from cord blood	blood
3	chr2:149193000-149226000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:149193400-149221600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:149194000-149216200	Weak transcription	Fetal Intestine Small	intestine
6	chr2:149194800-149216200	Weak transcription	Psoas Muscle	Psoas
7	chr2:149198600-149221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:149198600-149226000	Weak transcription	HSMM	muscle
9	chr2:149208400-149219400	Weak transcription	Aorta	Aorta
10	chr2:149208800-149221400	Weak transcription	Ovary	ovary
11	chr2:149208800-149226200	Weak transcription	Fetal Brain Male	brain
12	chr2:149209600-149230200	Weak transcription	Small Intestine	intestine
13	chr2:149210800-149221800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:149210800-149227800	Weak transcription	HUVEC	blood vessel
15	chr2:149211600-149221400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:149212000-149221400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:149212200-149225600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:149214000-149227800	Weak transcription	HepG2	liver
19	chr2:149214200-149214600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:149214200-149221400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr2:149214200-149225800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:149214200-149226000	Weak transcription	Placenta	Placenta
23	chr2:149214400-149226000	Weak transcription	Fetal Muscle Trunk	muscle

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