Variant report

Variant	rs564647854
Chromosome Location	chr11:73184822-73184823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73182923..73184833-chr12:110717693..110719478,2	MCF-7	breast:
2	chr11:73183792..73185927-chr11:73188418..73190143,2	K562	blood:

Variant related genes	Relation type
ENSG00000174437	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv520130	chr11:73183598-73223776	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
4	chr11:73151000-73187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:73156000-73187800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
7	chr11:73165200-73186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:73168600-73189800	Weak transcription	Hela-S3	cervix
9	chr11:73170400-73185800	Weak transcription	HepG2	liver
10	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:73174200-73186800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:73174600-73187800	Weak transcription	Primary T cells from cord blood	blood
13	chr11:73176400-73186600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:73177000-73189800	Weak transcription	Fetal Heart	heart
15	chr11:73177400-73189800	Weak transcription	HMEC	breast
16	chr11:73177400-73190000	Weak transcription	Osteobl	bone
17	chr11:73177400-73191400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:73177400-73191800	Weak transcription	NHDF-Ad	bronchial
19	chr11:73177600-73186800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:73178600-73190000	Weak transcription	Fetal Brain Male	brain
21	chr11:73178800-73186600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:73179600-73192400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:73180000-73188000	Weak transcription	Primary B cells from cord blood	blood
24	chr11:73180000-73191800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:73180200-73186600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:73180600-73186800	Weak transcription	Brain Substantia Nigra	brain
27	chr11:73180600-73189600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:73180800-73186800	Weak transcription	Right Ventricle	heart
29	chr11:73181600-73188000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:73181600-73189800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:73181800-73186800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:73181800-73186800	Weak transcription	Right Atrium	heart
33	chr11:73182000-73185800	Weak transcription	Gastric	stomach
34	chr11:73182000-73230000	Weak transcription	Dnd41	blood
35	chr11:73182200-73185800	Weak transcription	Psoas Muscle	Psoas
36	chr11:73182200-73189400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:73184800-73186000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:73184800-73186800	Weak transcription	Left Ventricle	heart

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