Variant report

Variant	rs564671330
Chromosome Location	chr15:57226050-57226051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57209996..57212300-chr15:57225729..57228088,3	K562	blood:
2	chr15:57219695..57221734-chr15:57225928..57228525,2	K562	blood:
3	chr15:57215422..57217856-chr15:57225443..57228595,3	K562	blood:
4	chr15:57222937..57224563-chr15:57225257..57227921,2	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57230400	Weak transcription	Lung	lung
2	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
4	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:57212800-57227200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:57213000-57227400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:57213400-57226800	Weak transcription	Brain Germinal Matrix	brain
9	chr15:57215600-57227400	Weak transcription	Fetal Brain Female	brain
10	chr15:57216400-57241800	Weak transcription	Fetal Brain Male	brain
11	chr15:57220200-57226200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:57220400-57226800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr15:57220400-57236400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:57220800-57226200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:57221000-57226600	Enhancers	Fetal Intestine Small	intestine
16	chr15:57221200-57226600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:57221400-57226600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:57221400-57227200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:57221600-57226400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr15:57221600-57226600	Weak transcription	HSMMtube	muscle
21	chr15:57221800-57226800	Enhancers	Brain Anterior Caudate	brain
22	chr15:57222200-57226200	Weak transcription	NHEK	skin
23	chr15:57222400-57227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:57222400-57227400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:57222400-57229600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:57222400-57231200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:57222600-57226600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr15:57222600-57228800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:57222600-57229000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:57222600-57231200	Weak transcription	Osteobl	bone
31	chr15:57222600-57231800	Weak transcription	HSMM	muscle
32	chr15:57222600-57233000	Weak transcription	Right Ventricle	heart
33	chr15:57222600-57250200	Weak transcription	NH-A	brain
34	chr15:57222800-57231800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr15:57222800-57232600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:57222800-57240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:57222800-57255000	Weak transcription	HMEC	breast
38	chr15:57223000-57226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:57223000-57227400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:57223000-57236800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:57223200-57226400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:57223200-57226600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:57223200-57226600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:57223200-57227000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:57223200-57227400	Enhancers	Brain Hippocampus Middle	brain
46	chr15:57223200-57227400	Weak transcription	Placenta	Placenta
47	chr15:57223200-57230800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:57223200-57240400	Weak transcription	Aorta	Aorta
49	chr15:57223600-57226400	Active TSS	Thymus	Thymus
50	chr15:57224200-57231000	Weak transcription	NHDF-Ad	bronchial

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