Variant report

Variant	rs564677988
Chromosome Location	chr4:55999288-55999289
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv3397514	chr4:55997895-55999893	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55997800-56003000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:55998400-55999400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:55999000-55999600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:55999000-55999600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55999000-56000200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:55999000-56000400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:55999000-56000600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:55999200-55999600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:55999200-55999600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:55999200-55999600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:55999200-55999600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:55999200-56000200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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