Variant report

Variant	rs564691845
Chromosome Location	chr6:28763329-28763330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28759600-28763600	Weak transcription	Hela-S3	cervix
2	chr6:28761600-28763800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:28761600-28764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:28761800-28763600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:28761800-28763600	Flanking Active TSS	K562	blood
6	chr6:28761800-28764200	Flanking Active TSS	HepG2	liver
7	chr6:28762800-28763400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:28762800-28763400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:28762800-28763400	Enhancers	HMEC	breast
10	chr6:28762800-28763400	Bivalent Enhancer	Osteobl	bone
11	chr6:28762800-28763600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr6:28762800-28763800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:28763000-28763400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr6:28763000-28763400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:28763000-28763400	Flanking Active TSS	A549	lung
16	chr6:28763000-28763400	Bivalent Enhancer	NHEK	skin
17	chr6:28763200-28763400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:28763200-28763400	Active TSS	GM12878-XiMat	blood
19	chr6:28763200-28763600	Bivalent Enhancer	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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