Variant report

Variant	rs564773380
Chromosome Location	chr13:90015960-90015961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:90015912-90015962	LNCaP	prostate:	n/a
2	chr13:90015912-90015962	PANC-1	pancreas:	n/a
3	chr13:90015912-90015962	U87	brain:	n/a
4	chr13:90015912-90015962	HCM	heart:	n/a
5	chr13:90015912-90015962	ProgFib	skin:	n/a
6	chr13:90015912-90015962	HIPEpiC	eye:	n/a
7	chr13:90015912-90015962	GM12878	blood:	n/a
8	chr13:90015912-90015962	GM12891	blood:	n/a
9	chr13:90015912-90015962	NHDF-neo	bronchial:	n/a
10	chr13:90015912-90015962	HEK293	kidney:	embryo
11	chr13:90015912-90015962	SAEC	small airway:	n/a
12	chr13:90015912-90015962	AG04450	lung:	fetal
13	chr13:90015912-90015962	AG04449	skin:	fetal
14	chr13:90015912-90015962	AG09319	gingival:	n/a
15	chr13:90015912-90015962	ECC-1	luminal epithelium:	n/a
16	chr13:90015912-90015962	MCF10A-Er-Src	breast:	n/a
17	chr13:90015912-90015962	HCF	heart:	n/a
18	chr13:90015912-90015962	GM06990	blood:	n/a
19	chr13:90015912-90015962	Caco-2	colon:	n/a
20	chr13:90015912-90015962	HRPEpiC	eye:	n/a
21	chr13:90015912-90015962	RPTEC	kidney:	n/a
22	chr13:90015912-90015962	K562	blood:	n/a
23	chr13:90015912-90015962	HEEpiC	esophagus:	n/a
24	chr13:90015912-90015962	SKMC	muscle:	n/a
25	chr13:90015912-90015962	HAEpiC	amniotic membrane:	n/a
26	chr13:90015912-90015962	NH-A	brain:	n/a
27	chr13:90015912-90015962	BJ	skin:	n/a
28	chr13:90015912-90015962	AG10803	skin:	n/a
29	chr13:90015912-90015962	HCPEpiC	choroid plexus:	n/a
30	chr13:90015912-90015962	HRCEpiC	kidney:	n/a
31	chr13:90015912-90015962	Jurkat	blood:	n/a
32	chr13:90015912-90015962	CMK	blood:	n/a
33	chr13:90015912-90015962	PFSK-1	brain:	n/a
34	chr13:90015912-90015962	HMEC	breast:	n/a
35	chr13:90015912-90015962	A549	lung:	n/a
36	chr13:90015912-90015962	AG09309	skin:	n/a
37	chr13:90015912-90015962	Hela-S3	cervix:	n/a
38	chr13:90015912-90015962	NHBE	bronchial:	n/a
39	chr13:90015912-90015962	SK-N-MC	brain:	n/a
40	chr13:90015912-90015962	H1-hESC	embryonic stem cell:	embryo
41	chr13:90015912-90015962	PrEC	prostate:	n/a
42	chr13:90015912-90015962	SK-N-SH	brain:	n/a
43	chr13:90015912-90015962	GM12892	blood:	n/a
44	chr13:90015912-90015962	NT2-D1	testis:	n/a
45	chr13:90015912-90015962	IMR90	lung:	fetal
46	chr13:90015912-90015962	HCT-116	colon:	n/a
47	chr13:90015912-90015962	HRE	kidney:	n/a
48	chr13:90015912-90015962	AoSMC	blood vessel:	n/a
49	chr13:90015912-90015962	GM19239	blood:	n/a
50	chr13:90015912-90015962	HepG2	liver:	n/a

No data

Variant related genes	Relation type
SP3P	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90015800-90016000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:90015800-90017000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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