Variant report

Variant	rs564784696
Chromosome Location	chr2:99520829-99520830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv582518	chr2:99498774-99546355	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv874697	chr2:99520608-99558970	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99512000-99526000	Weak transcription	Right Atrium	heart
2	chr2:99513200-99525000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:99515200-99524600	Weak transcription	Pancreas	Pancrea
4	chr2:99517600-99526000	Weak transcription	Gastric	stomach
5	chr2:99518800-99525000	Weak transcription	Spleen	Spleen
6	chr2:99519600-99524800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:99520400-99521000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:99520400-99521000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:99520400-99522400	Weak transcription	Fetal Brain Male	brain
10	chr2:99520600-99521000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:99520600-99521000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:99520600-99521000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:99520600-99521000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:99520600-99521400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:99520800-99521000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:99520800-99528600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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