Variant report

Variant	rs564834221
Chromosome Location	chr11:64913262-64913263
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:64913244-64913549	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64912371..64919818-chr11:64945990..64951836,8	MCF-7	breast:
2	chr11:64912434..64914841-chr11:64936262..64938354,2	K562	blood:
3	chr11:64912189..64921319-chr11:64935429..64940801,16	K562	blood:
4	chr11:64892136..64894424-chr11:64912450..64914597,2	MCF-7	breast:
5	chr11:64901191..64904408-chr11:64910543..64914377,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYVN1-2	chr11:64913162-64913443	NONHSAT022092

No data

No data

Variant related genes	Relation type
RNU2-23P	TF binding region
ENSG00000149792	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000014216	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv972038	chr11:64911552-64913423	Weak transcription Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64903600-64917400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:64904200-64913400	Weak transcription	Primary B cells from cord blood	blood
3	chr11:64910200-64913800	Weak transcription	HepG2	liver
4	chr11:64912200-64915000	Enhancers	Liver	Liver
5	chr11:64913000-64914600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:64913200-64914600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:64913200-64914600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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