The 2.0 version of rSNPBase

Variant report

Variant rs564837954
Chromosome Location chr7:50829457-50829458
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:50798800-50832400 Weak transcription HSMM muscle
2 chr7:50798800-50837200 Weak transcription HSMMtube muscle
3 chr7:50807800-50834800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr7:50808000-50832400 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr7:50808000-50835800 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr7:50808200-50834200 Weak transcription Brain Angular Gyrus brain
7 chr7:50810800-50829600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr7:50810800-50829600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr7:50814400-50838800 Weak transcription Adipose Nuclei Adipose
10 chr7:50815000-50834400 Weak transcription H9 Cell Line embryonic stem cell
11 chr7:50816000-50834200 Weak transcription A549 lung
12 chr7:50816200-50831400 Weak transcription H1 Cell Line embryonic stem cell
13 chr7:50816200-50834000 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr7:50816200-50849600 Weak transcription Muscle Satellite Cultured Cells --
15 chr7:50816800-50833800 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr7:50819400-50831800 Weak transcription Brain Hippocampus Middle brain
17 chr7:50819600-50833400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr7:50820200-50843000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr7:50822000-50849800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr7:50822200-50832200 Weak transcription Fetal Muscle Trunk muscle
21 chr7:50822200-50835000 Weak transcription Esophagus oesophagus
22 chr7:50822400-50834200 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr7:50822600-50831600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr7:50822800-50833800 Weak transcription Hela-S3 cervix
25 chr7:50822800-50850200 Weak transcription Primary hematopoietic stem cells blood
26 chr7:50823000-50832200 Weak transcription Brain Germinal Matrix brain
27 chr7:50823200-50834000 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr7:50823400-50832400 Weak transcription Fetal Brain Female brain
29 chr7:50823600-50830000 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr7:50823600-50834800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr7:50823600-50834800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr7:50823600-50849200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr7:50823600-50849200 Weak transcription Fetal Lung lung
34 chr7:50823800-50831800 Weak transcription Fetal Stomach stomach
35 chr7:50823800-50834600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr7:50824200-50831200 Weak transcription Spleen Spleen
37 chr7:50824400-50834800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr7:50824400-50843200 Weak transcription Duodenum Mucosa Duodenum
39 chr7:50824600-50831200 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr7:50824800-50836400 Weak transcription NH-A brain
41 chr7:50825000-50832200 Weak transcription Brain Substantia Nigra brain
42 chr7:50826000-50830800 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr7:50826000-50834200 Weak transcription Brain Inferior Temporal Lobe brain
44 chr7:50826000-50839000 Weak transcription Ovary ovary
45 chr7:50826400-50829600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr7:50826400-50829800 Weak transcription Colon Smooth Muscle Colon
47 chr7:50826400-50833200 Weak transcription Fetal Intestine Large intestine
48 chr7:50826400-50836200 Weak transcription Stomach Smooth Muscle stomach
49 chr7:50826600-50830400 Weak transcription Fetal Intestine Small intestine
50 chr7:50826600-50848400 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015