Variant report

Variant rs564874885
Chromosome Location chr1:180279727-180279728
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
2 chr1:180245400-180280400 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:180247800-180284200 Weak transcription Fetal Thymus thymus
4 chr1:180250400-180279800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:180254400-180280400 Weak transcription Fetal Stomach stomach
6 chr1:180254800-180282400 Weak transcription Fetal Muscle Leg muscle
7 chr1:180257600-180289600 Weak transcription Hela-S3 cervix
8 chr1:180257800-180279800 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr1:180257800-180287200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:180257800-180296200 Weak transcription Left Ventricle heart
11 chr1:180258400-180285200 Weak transcription Ovary ovary
12 chr1:180261200-180284200 Weak transcription K562 blood
13 chr1:180262800-180280000 Weak transcription Primary B cells from cord blood blood
14 chr1:180267000-180284400 Weak transcription GM12878-XiMat blood
15 chr1:180268200-180282800 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:180269200-180282000 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr1:180271600-180284600 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:180274600-180281600 Weak transcription Fetal Brain Male brain
19 chr1:180275000-180280600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:180276200-180280400 Weak transcription Liver Liver
21 chr1:180276200-180283800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:180276400-180279800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:180276400-180280200 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr1:180276400-180280800 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr1:180276400-180281600 Weak transcription Primary B cells from peripheral blood blood
26 chr1:180276400-180284600 Weak transcription Fetal Lung lung
27 chr1:180276600-180280000 Weak transcription Primary hematopoietic stem cells blood
28 chr1:180276600-180280000 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr1:180276600-180280000 Weak transcription Dnd41 blood
30 chr1:180276600-180280200 Weak transcription Primary T cells from cord blood blood
31 chr1:180276600-180280600 Weak transcription Placenta Placenta
32 chr1:180276800-180280400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:180277200-180280600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr1:180277600-180280800 Enhancers HepG2 liver
35 chr1:180277800-180280200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:180277800-180283800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr1:180277800-180284200 Weak transcription Brain Substantia Nigra brain
38 chr1:180277800-180284800 Weak transcription Psoas Muscle Psoas
39 chr1:180278000-180282600 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr1:180278000-180284200 Weak transcription iPS-18 Cell Line embryonic stem cell
41 chr1:180278000-180285200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:180278000-180298200 Weak transcription Esophagus oesophagus
43 chr1:180278200-180280200 Weak transcription Aorta Aorta
44 chr1:180278200-180281000 Flanking Active TSS A549 lung
45 chr1:180278400-180280200 Weak transcription Primary T cells fromperipheralblood blood
46 chr1:180278400-180280200 Weak transcription Thymus Thymus
47 chr1:180278400-180282200 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr1:180278600-180279800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:180278600-180279800 Enhancers Muscle Satellite Cultured Cells --
50 chr1:180278600-180279800 Enhancers HMEC breast

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