Variant report

Variant	rs564916403
Chromosome Location	chr9:71399536-71399537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:71398863..71402159-chr9:71407140..71410574,3	K562	blood:
2	chr9:71393340..71397150-chr9:71397904..71401826,5	MCF-7	breast:
3	chr9:71397068..71400120-chr9:71405362..71406999,3	MCF-7	breast:
4	chr9:71397331..71400852-chr9:71402232..71407061,5	K562	blood:
5	chr9:71394389..71396073-chr9:71398400..71400500,2	K562	blood:
6	chr9:71398048..71400496-chr9:71420484..71423422,2	K562	blood:
7	chr9:71382779..71384863-chr9:71399277..71400843,2	MCF-7	breast:
8	chr9:71347274..71349362-chr9:71397346..71399719,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187866	Chromatin interaction
ENSG00000236998	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71395600-71400200	Flanking Active TSS	Brain Germinal Matrix	brain
2	chr9:71395800-71400200	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:71396000-71400400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:71396000-71402400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:71396000-71403400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:71396000-71408200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:71396200-71399600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:71396200-71400600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:71396200-71400800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr9:71396200-71400800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:71396200-71400800	Enhancers	Brain Hippocampus Middle	brain
12	chr9:71396200-71400800	Enhancers	Fetal Heart	heart
13	chr9:71396200-71401000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:71396200-71401000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr9:71396200-71409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:71396400-71400200	Enhancers	Colon Smooth Muscle	Colon
17	chr9:71396600-71400400	Enhancers	Thymus	Thymus
18	chr9:71397200-71400000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:71397200-71400200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:71397200-71401000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:71397200-71402200	Weak transcription	A549	lung
22	chr9:71397200-71403800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:71397200-71404200	Weak transcription	Esophagus	oesophagus
24	chr9:71397200-71409600	Weak transcription	Colonic Mucosa	Colon
25	chr9:71397200-71417400	Weak transcription	Lung	lung
26	chr9:71397600-71399600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr9:71397600-71399800	Weak transcription	HSMM	muscle
28	chr9:71397800-71401400	Weak transcription	Placenta	Placenta
29	chr9:71397800-71408000	Weak transcription	Gastric	stomach
30	chr9:71398000-71400000	Enhancers	Brain Anterior Caudate	brain
31	chr9:71398000-71400000	Weak transcription	Osteobl	bone
32	chr9:71398000-71400400	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:71398200-71399600	Enhancers	Brain Cingulate Gyrus	brain
34	chr9:71398200-71399800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:71398200-71400000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:71398200-71400000	Enhancers	Duodenum Mucosa	Duodenum
37	chr9:71398200-71400400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr9:71398400-71399800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr9:71398400-71399800	Enhancers	Dnd41	blood
40	chr9:71398400-71400200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr9:71398600-71404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:71398600-71405400	Strong transcription	Primary B cells from cord blood	blood
43	chr9:71398800-71399600	Weak transcription	Fetal Intestine Large	intestine
44	chr9:71398800-71399800	Weak transcription	Small Intestine	intestine
45	chr9:71398800-71400000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:71398800-71401000	Enhancers	Rectal Smooth Muscle	rectum
47	chr9:71398800-71401800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:71398800-71401800	Weak transcription	Aorta	Aorta
49	chr9:71398800-71406000	Weak transcription	Spleen	Spleen
50	chr9:71398800-71408000	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links