Variant report

Variant	rs564946426
Chromosome Location	chr13:111045453-111045454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2751128	chr13:111040798-111132490	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3448379	chr13:111045451-111048449	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111039200-111045600	Enhancers	Placenta	Placenta
2	chr13:111040600-111047600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:111040800-111048000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:111040800-111049600	Enhancers	NHDF-Ad	bronchial
5	chr13:111040800-111050800	Weak transcription	Psoas Muscle	Psoas
6	chr13:111040800-111058000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:111041200-111048000	Enhancers	Aorta	Aorta
8	chr13:111041400-111048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:111041400-111048600	Weak transcription	Esophagus	oesophagus
10	chr13:111041400-111058000	Weak transcription	Fetal Intestine Large	intestine
11	chr13:111041600-111046200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:111041600-111047400	Weak transcription	Colonic Mucosa	Colon
13	chr13:111041800-111045600	Enhancers	Rectal Smooth Muscle	rectum
14	chr13:111041800-111048600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:111042200-111046600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:111042200-111048800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:111042800-111045600	Enhancers	HSMMtube	muscle
18	chr13:111043000-111048800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:111043000-111049600	Weak transcription	Right Ventricle	heart
20	chr13:111043000-111057000	Weak transcription	NHEK	skin
21	chr13:111043000-111059200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:111043000-111060000	Weak transcription	A549	lung
23	chr13:111043600-111045600	Enhancers	HSMM	muscle
24	chr13:111043600-111046600	Enhancers	Fetal Muscle Leg	muscle
25	chr13:111044000-111045600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:111044000-111048400	Weak transcription	HMEC	breast
27	chr13:111044000-111051000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:111044200-111045600	Enhancers	Left Ventricle	heart
29	chr13:111044200-111046000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr13:111044200-111049400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:111044400-111046400	Enhancers	Fetal Muscle Trunk	muscle
32	chr13:111044400-111048800	Weak transcription	Fetal Intestine Small	intestine
33	chr13:111044600-111045600	Enhancers	Fetal Kidney	kidney
34	chr13:111044600-111045600	Enhancers	HUVEC	blood vessel
35	chr13:111044600-111046000	Genic enhancers	Stomach Smooth Muscle	stomach
36	chr13:111044800-111045600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr13:111044800-111045600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr13:111044800-111045600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr13:111044800-111045600	Enhancers	Fetal Stomach	stomach
40	chr13:111044800-111049600	Enhancers	Adipose Nuclei	Adipose
41	chr13:111045000-111045600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr13:111045000-111045600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr13:111045000-111046600	Weak transcription	Ovary	ovary
44	chr13:111045000-111046800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr13:111045000-111046800	Weak transcription	Lung	lung
46	chr13:111045000-111049600	Enhancers	NHLF	lung
47	chr13:111045200-111045600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr13:111045200-111045600	Enhancers	Spleen	Spleen
49	chr13:111045200-111046600	Weak transcription	Right Atrium	heart
50	chr13:111045200-111046800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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