Variant report

Variant	rs564959174
Chromosome Location	chr8:58978602-58978603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58972227..58973828-chr8:58977965..58980354,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1803360	chr8:58976889-58986166	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:58952800-58979600	Weak transcription	HSMMtube	muscle
4	chr8:58958000-58979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:58963800-58978800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:58966600-58980000	Weak transcription	Ovary	ovary
7	chr8:58968800-58981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:58969800-58979800	Weak transcription	HSMM	muscle
9	chr8:58970000-58979000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:58970400-58978800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:58970600-58979000	Weak transcription	NH-A	brain
12	chr8:58971200-58982800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:58973200-58979800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:58973600-58982600	Weak transcription	Spleen	Spleen
15	chr8:58974000-58979800	Weak transcription	NHLF	lung
16	chr8:58974200-58979000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:58974400-58979200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:58974400-58979200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:58974400-58979200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:58974400-58979600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:58974400-58979600	Weak transcription	NHDF-Ad	bronchial
22	chr8:58974600-58979400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:58975600-58978800	Weak transcription	Brain Anterior Caudate	brain
24	chr8:58975800-58978800	Weak transcription	Left Ventricle	heart
25	chr8:58975800-58978800	Weak transcription	Right Ventricle	heart
26	chr8:58975800-58979000	Weak transcription	Fetal Brain Female	brain
27	chr8:58975800-58982600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:58976000-58978800	Weak transcription	Fetal Brain Male	brain
29	chr8:58977200-58980400	Enhancers	Fetal Heart	heart
30	chr8:58977400-58981200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr8:58977600-58980200	Enhancers	Fetal Kidney	kidney
32	chr8:58977600-58981400	Enhancers	Fetal Lung	lung
33	chr8:58978200-58979200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr8:58978200-58981400	Enhancers	Liver	Liver
35	chr8:58978400-58979000	Strong transcription	Fetal Muscle Leg	muscle
36	chr8:58978400-58979600	Genic enhancers	Fetal Stomach	stomach
37	chr8:58978400-58980600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:58978400-58980800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr8:58978400-58980800	Enhancers	Brain Germinal Matrix	brain
40	chr8:58978600-58979000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr8:58978600-58979000	Enhancers	Psoas Muscle	Psoas
42	chr8:58978600-58979200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr8:58978600-58979600	Enhancers	Lung	lung
44	chr8:58978600-58980000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr8:58978600-58980200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:58978600-58980400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr8:58978600-58980400	Enhancers	Right Atrium	heart
48	chr8:58978600-58980600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr8:58978600-58981200	Enhancers	Colon Smooth Muscle	Colon
50	chr8:58978600-58982200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links