Variant report

Variant	rs564973382
Chromosome Location	chr7:97886134-97886135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97881770..97884305-chr7:97885648..97888001,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BRI3-2	chr7:97881470-97887682	NONHSAT122186

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv831066	chr7:97726879-97890550	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1033029	chr7:97773232-98017992	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv539033	chr7:97773232-98017992	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv888760	chr7:97816327-97965016	Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv1800947	chr7:97857675-97889672	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
14	nsv1026477	chr7:97869446-98034129	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	esv275000	chr7:97885725-97887997	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97882200-97886200	Weak transcription	Aorta	Aorta
2	chr7:97882200-97887800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:97882200-97889400	Weak transcription	Small Intestine	intestine
4	chr7:97882200-97893200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:97882400-97888600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:97882400-97888600	Weak transcription	Fetal Lung	lung
7	chr7:97882400-97890800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:97882400-97894400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:97882400-97895200	Weak transcription	NHDF-Ad	bronchial
10	chr7:97882400-97895400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:97882600-97886200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:97882600-97887600	Weak transcription	HMEC	breast
13	chr7:97882600-97888600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:97882600-97889000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:97882600-97890000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:97882600-97890200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:97882600-97892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:97882600-97892800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:97882600-97893000	Weak transcription	Brain Germinal Matrix	brain
20	chr7:97882800-97886200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:97882800-97886200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:97882800-97886200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:97882800-97886200	Weak transcription	Esophagus	oesophagus
24	chr7:97882800-97886200	Weak transcription	Fetal Stomach	stomach
25	chr7:97882800-97890000	Weak transcription	HSMMtube	muscle
26	chr7:97882800-97895000	Weak transcription	HUVEC	blood vessel
27	chr7:97882800-97895200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:97882800-97895200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:97882800-97895200	Weak transcription	NH-A	brain
30	chr7:97882800-97895200	Weak transcription	NHLF	lung
31	chr7:97883000-97886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:97883000-97886200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:97883000-97886200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:97883000-97886200	Weak transcription	Fetal Intestine Large	intestine
35	chr7:97883000-97886200	Weak transcription	Left Ventricle	heart
36	chr7:97883000-97886200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:97883000-97886200	Weak transcription	Spleen	Spleen
38	chr7:97883000-97887200	Weak transcription	Brain Angular Gyrus	brain
39	chr7:97883000-97888000	Weak transcription	Psoas Muscle	Psoas
40	chr7:97883000-97890000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:97883000-97890000	Weak transcription	GM12878-XiMat	blood
42	chr7:97883000-97890200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:97883000-97890200	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:97883000-97890200	Weak transcription	Hela-S3	cervix
45	chr7:97883000-97890800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr7:97883000-97890800	Weak transcription	A549	lung
47	chr7:97883000-97893000	Weak transcription	Stomach Mucosa	stomach
48	chr7:97883000-97893400	Weak transcription	Colonic Mucosa	Colon
49	chr7:97883000-97894800	Weak transcription	Fetal Brain Male	brain
50	chr7:97883200-97886200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links