Variant report

Variant	rs564983450
Chromosome Location	chr4:7995929-7995930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7993971..7996546-chr4:8010581..8013516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163995	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829851	chr4:7958698-8049060	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv878579	chr4:7969594-8011696	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv593623	chr4:7991587-8012167	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv829852	chr4:7991906-8151267	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	esv3464725	chr4:7995216-7997325	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3464726	chr4:7995675-7996998	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3449401	chr4:7995696-7997007	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3487361	chr4:7995699-7996973	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3464728	chr4:7995730-7996959	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3464729	chr4:7995731-7996963	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3464727	chr4:7995743-7996921	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv4240	chr4:7995743-7997171	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3353929	chr4:7995759-7996916	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3464732	chr4:7995781-7996898	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv3464733	chr4:7995795-7996909	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv3487362	chr4:7995795-7996909	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv1000260	chr4:7995797-7996895	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv1632857	chr4:7995809-7996908	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7975800-8004800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:7978800-8006000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:7979600-8011400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:7985400-8004800	Weak transcription	Brain Angular Gyrus	brain
5	chr4:7986800-8011400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:7988400-8001200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:7988600-7996800	Weak transcription	Fetal Intestine Small	intestine
8	chr4:7989800-8005800	Weak transcription	Psoas Muscle	Psoas
9	chr4:7991600-8006600	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:7992800-8006600	Weak transcription	Aorta	Aorta
11	chr4:7994200-8006000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:7994400-7997400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:7994400-7997600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:7994600-7997000	Weak transcription	Fetal Stomach	stomach
15	chr4:7995000-7997000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:7995200-7997000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:7995200-7997200	Weak transcription	Spleen	Spleen
18	chr4:7995200-8000000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:7995800-8004000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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