Variant report

Variant	rs565009174
Chromosome Location	chr13:30760553-30760554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3386665	chr13:30760452-30764350	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30747600-30766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:30754000-30761000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:30754000-30798800	Weak transcription	Brain Anterior Caudate	brain
4	chr13:30754200-30760800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:30755200-30766600	Weak transcription	Fetal Kidney	kidney
6	chr13:30756600-30760800	Weak transcription	Thymus	Thymus
7	chr13:30756600-30764800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:30757600-30774200	Weak transcription	Left Ventricle	heart
9	chr13:30759800-30761800	Enhancers	Fetal Thymus	thymus
10	chr13:30760000-30760800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:30760000-30761800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:30760000-30761800	Enhancers	Fetal Brain Female	brain
13	chr13:30760400-30761800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:30760400-30762000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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