Variant report

Variant	rs565023187
Chromosome Location	chr1:94703012-94703013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94702688..94703242-chr17:73775493..73776017,2	HCT-116	colon:
2	chr1:94526735..94527649-chr1:94702636..94703585,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132475	Chromatin interaction
ENSG00000198691	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326788	chr1:94701989-94704537	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94699200-94703600	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr1:94699600-94703800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:94699800-94703200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:94699800-94703400	Active TSS	HMEC	breast
5	chr1:94700200-94703600	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr1:94700400-94703200	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr1:94700600-94703400	Active TSS	Muscle Satellite Cultured Cells	--
8	chr1:94700600-94703800	Active TSS	Right Atrium	heart
9	chr1:94700800-94703200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
10	chr1:94700800-94703400	Active TSS	Stomach Smooth Muscle	stomach
11	chr1:94700800-94703600	Active TSS	NHLF	lung
12	chr1:94700800-94703800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:94701000-94703400	Active TSS	Fetal Muscle Trunk	muscle
14	chr1:94701000-94703400	Active TSS	NHEK	skin
15	chr1:94701000-94703600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:94701000-94703600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:94701000-94703600	Active TSS	NHDF-Ad	bronchial
18	chr1:94701000-94703800	Active TSS	Psoas Muscle	Psoas
19	chr1:94701000-94703800	Active TSS	Right Ventricle	heart
20	chr1:94701000-94704000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chr1:94701200-94703200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr1:94701200-94703400	Active TSS	Fetal Heart	heart
23	chr1:94701200-94703600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:94701200-94703600	Active TSS	HSMM	muscle
25	chr1:94701200-94703600	Active TSS	HSMMtube	muscle
26	chr1:94701200-94703800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:94701200-94703800	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr1:94701200-94703800	Active TSS	Left Ventricle	heart
29	chr1:94701400-94703400	Active TSS	Pancreas	Pancrea
30	chr1:94701400-94703400	Active TSS	HUVEC	blood vessel
31	chr1:94701400-94703400	Active TSS	NH-A	brain
32	chr1:94701400-94703600	Active TSS	Lung	lung
33	chr1:94701400-94703600	Active TSS	Ovary	ovary
34	chr1:94701400-94703600	Active TSS	A549	lung
35	chr1:94701400-94703800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:94701600-94703200	Bivalent/Poised TSS	Thymus	Thymus
37	chr1:94701600-94703600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr1:94701600-94703600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
39	chr1:94701600-94703600	Active TSS	Placenta Amnion	Placenta Amnion
40	chr1:94701600-94703800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:94701600-94704000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
42	chr1:94701800-94703400	Active TSS	Esophagus	oesophagus
43	chr1:94701800-94703600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:94701800-94703600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:94701800-94703600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:94701800-94703800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
47	chr1:94701800-94703800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:94701800-94704000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
49	chr1:94701800-94704000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
50	chr1:94702000-94703200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links