Variant report

Variant	rs565040828
Chromosome Location	chr15:73008129-73008130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73006465..73009251-chr15:73067136..73069749,2	K562	blood:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv933817	chr15:73007471-73009120	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv933905	chr15:73007471-73009230	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72979200-73023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72979200-73023600	Weak transcription	Lung	lung
3	chr15:72979400-73027200	Weak transcription	Aorta	Aorta
4	chr15:72979600-73023200	Weak transcription	Fetal Kidney	kidney
5	chr15:72979600-73026800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:72979800-73027400	Weak transcription	Hela-S3	cervix
7	chr15:72981000-73018600	Weak transcription	Pancreas	Pancrea
8	chr15:72985200-73021000	Weak transcription	Fetal Intestine Small	intestine
9	chr15:72993000-73028800	Weak transcription	NHEK	skin
10	chr15:72999000-73009600	Weak transcription	HSMMtube	muscle
11	chr15:72999000-73020400	Weak transcription	NH-A	brain
12	chr15:72999000-73021800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:72999000-73044000	Weak transcription	Small Intestine	intestine
14	chr15:72999600-73027600	Weak transcription	NHLF	lung
15	chr15:73001200-73027600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:73001400-73020400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:73001400-73027600	Weak transcription	Right Ventricle	heart
20	chr15:73001600-73008600	Weak transcription	Placenta	Placenta
21	chr15:73001600-73018600	Weak transcription	HepG2	liver
22	chr15:73001800-73027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:73001800-73027400	Weak transcription	K562	blood
24	chr15:73001800-73033200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:73002000-73054600	Weak transcription	Fetal Brain Male	brain
26	chr15:73002200-73023000	Weak transcription	Fetal Thymus	thymus
27	chr15:73002200-73026000	Weak transcription	Fetal Heart	heart
28	chr15:73002200-73028800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:73002400-73010600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:73002400-73022800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:73002400-73028800	Weak transcription	Psoas Muscle	Psoas
32	chr15:73003000-73018600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:73003000-73027400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr15:73003000-73028800	Weak transcription	Dnd41	blood
35	chr15:73003000-73031400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:73003200-73009400	Weak transcription	Brain Angular Gyrus	brain
37	chr15:73003200-73027800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr15:73003200-73029000	Weak transcription	Esophagus	oesophagus
39	chr15:73003400-73023000	Weak transcription	Colonic Mucosa	Colon
40	chr15:73003400-73029000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr15:73003400-73044000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:73003600-73010400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:73003800-73011600	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr15:73003800-73012000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:73003800-73012000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:73004000-73010200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:73004000-73011400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:73004000-73012000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:73004000-73027400	Weak transcription	Gastric	stomach
50	chr15:73004200-73010200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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