Variant report

Variant	rs565059078
Chromosome Location	chr9:13861288-13861289
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13856400-13862600	Weak transcription	Left Ventricle	heart
3	chr9:13857600-13863000	Weak transcription	HSMM	muscle
4	chr9:13857800-13862000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:13858200-13862600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:13858800-13861800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:13858800-13862200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:13859400-13862600	Weak transcription	Fetal Heart	heart
9	chr9:13860000-13861600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr9:13860000-13862000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:13860000-13862200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:13860200-13861600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:13860200-13861600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:13860200-13862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:13860200-13862400	Enhancers	Fetal Lung	lung
16	chr9:13860200-13864400	Enhancers	Adipose Nuclei	Adipose
17	chr9:13860400-13863200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:13860600-13861800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:13860600-13861800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:13860600-13864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:13860800-13861800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:13861000-13861400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:13861000-13861600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:13861000-13861600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:13861000-13862000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:13861000-13863600	Enhancers	Fetal Muscle Leg	muscle
28	chr9:13861200-13861400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:13861200-13861600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:13861200-13861600	Enhancers	Fetal Stomach	stomach

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